Resumo

GOYA JORGE, Addel Arnaldo; CANIZARES, Deborah Galpert; MILLO SANCHEZ, Reinier  e  COMPANIONI BRITO, Claudia. Scalability Analysis of the parallel calculation of similarity measures between pair of genes. Rev cuba cienc informat [online]. 2016, vol.10, n.3, pp. 130-143. ISSN 2227-1899.

ABSTRACT This paper analyzes the scalability of the parallel implementation of pairwise similarity measures for gene comparison in ortholog gene detection. This analysis is carried out by using metrics such as speedup and efficiency that are calculated for all vs all alignment and physicochemical profile comparisons. The experiments with a dataset of two genomes show an improvement in the execution time of the parallel implementations. However, scalability continues to be a goal for further implementations.

Palavras-chave : similarity measures; parallel computing; time complexity; scalability.

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